Dataset: Genomics of Adaptation to Environmental Change in Two Wild Bird Populations, 2012

Abstract

The purpose of this project was to develop a custom SNP array for genotype-phenotype mapping and also to understand how natural selection influences the genome. The DNA samples are taken from blood samples from house sparrows during field work. The data derives from four different islands on the Helgeland coast of Norway that are a part of a long-term study on house sparrows. The data material consists of genotypes from 1898 individuals and 6318 SNP. Two additional NFR projects have contributed to generating these data: "The Genetic Basis of Response to Selection in Natural Bird Populations - Insight from State-of-the-Art Genomics Analyses" (191847) and "The Effect of Population Size on Short-Term Rates of Evolution in Natural Populations" (221956).

For access to the dataset, use the NSD application form:  

http://www.nsd.uib.no/nsd/english/orderform.html

Variable Groups

Full Title

Genomics of Adaptation to Environmental Change in Two Wild Bird Populations, 2012

Identification Number

NSD2348

Authoring Entity

Name Affiliation
Husby, Arild Centre for Biodiversity Dynamics, Department of Biology, NTNU
Jensen, Henrik Centre for Biodiversity Dynamics, Department of Biology, NTNU

Producer

Name Affiliation Abbreviation Role
Husby, Arild Centre for Biodiversity Dynamics, Department of Biology, NTNU CBD, NTNU Principal Investigator
Jensen, Henrik Centre for Biodiversity Dynamics, Department of Biology, NTNU CBD, NTNU Principal Investigator

Copyright

Copyright (C) 2012 Arild Husby & Henrik Jensen, Centre for Biodiversity Dynamics, Department of Biology, NTNU

Funding Agency/Sponsor

Name Abbreviation Role Grant
The Research Council of Norway RCN 191847
The Research Council of Norway RCN 191847
The Research Council of Norway RCN 191847

Data Distributor

Name Affiliation Abbreviation
NSD – Norwegian Centre for Research Data NSD

Version

Date: 2016-09-08

Notes

Original data from Arild Husby & Henrik Jensen, Centre for Biodiversity Dynamics, Department of Biology, NTNU are documented and prepared, first NSD-version.

Bibliographic Citation

"Genomics of Adaptation to Environmental Change in Two Wild Bird Populations, 2012". Data collected by Arild Husby & Henrik Jensen, Centre for Biodiversity Dynamics, Department of Biology, NTNU. First NSD edition, Bergen 2016.

List of Keywords

Topic Classification

Time Period Covered

Start End Cycle
1998-01-01 2012-01-01

Date of Collection

Start End Cycle
1998-01-01 2012-01-01

Country

Norway  (NO)

Geographic Coverage

County

Geographic Unit

Four islands on the Helgeland coast in Northern Norway.

Unit of Analysis

Other

Universe

Individual 10k SNP genotype data of house sparrows.

Kind of Data

Other

Time Method

Cross-sectional survey

Data Collector

Sampling Procedure

The data material consists of genotypes from 1898 individuals and 6318 SNP.

Mode of Data Collection

Other

Location

Availability Status

NSD can in agreement with the Principal Investigator make data from "Genomics of Adaptation to Environmental Change in Two Wild Bird Populations, 2012" available when ordered until 01.01.2018. After this date, the data will be available for research, teaching and students when ordered.

Extent of Collection

Two data files; different formats can be made.

Restrictions

NSD can in agreement with the principal investigator make data from "Genomics of Adaptation to Environmental Change in Two Wild Bird Populations, 2012" available when ordered until 01.01.2018. After 01.01.2018 the data will be available for research, teaching and students when ordered.

Citation Requirement

Users are obliged to refer to producer and distributor of the data by writing the following in forewords or footnotes in eventual publications:
"(Some of) the data applied in the analysis in this publication are based on "Genomics of Adaptation to Environmental Change in Two Wild Bird Populations, 2012". The survey was financed by The Reasearch Council of Norway. The data are provided by Arild Husby, Henrik Jensen, Centre for Biodiversity Dynamics, Department of Biology, NTNU and prepared and made available by NSD – Norwegian Centre for Research Data. NeitherArild Husby, Henrik Jensen, Centre for Biodiversity Dynamics, Department of Biology, NTNU, The Research Council of Norway nor NSD are responsible for the analysis/interpretation of the data presented here.

Deposit Requirement

Access to data is given on the condition that NSD gets a PDF-file of eventual reports that are written on the basis of the data. This to ensure best possible information of the use of data we distribute.

Conditions

The order form has to include name, institutional affiliation, project title, information about sources of financing and postal address. A declaration of secrecy has to be signed before delivery of data.

Disclaimer

Neither Arild Husby, Henrik Jensen, Centre for Biodiversity Dynamics, Department of Biology, NTNU, The Research Council of Norway nor NSD are responsible for the analysis/interpretation of the data presented here.

Related Publications

The Easy Road to Genome-Wide Medium Density SNP Screening in a Non-Model Species: Development and Application of a 10 K SNP-Chip for the House Sparrow (Passer Domesticus).

Hagen, I. J., Billing, A. M., Rønning, B., Pedersen, S. A., Pärn, H., Slate, J. and Jensen, H. (2013) The Easy Road to Genome-Wide Medium Density SNP Screening in a Non-Model Species: Development and Application of a 10 K SNP-Chip for the House Sparrow (Passer Domesticus). Molecular Ecology Resources 13: 429-439.  

Doi: 10.1111/1755-0998.12088

Metadata Index

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